noĬhecking whether JNI programs can be compiled. yesĬhecking whether JVM will be loaded dynamically. Header prep.: '/etc/alternatives/java_sdk_openjdk/bin/javah'Ĭpp flags : '-I/etc/alternatives/java_sdk_openjdk/include -I/etc/alternatives/java_sdk_openjdk/include/linux' Interpreter : '/etc/alternatives/java_sdk_openjdk/jre/bin/java'Īrchiver : '/etc/alternatives/java_sdk_openjdk/bin/jar'Ĭompiler : '/etc/alternatives/java_sdk_openjdk/bin/javac'
R LIBRARY RJAVA INSTALL
Then when I try to install rJava using the recommended install.packages('rJava'), I'm getting an error: Updating Java configuration in /opt/conda/envs/R-3.6-p圓8/lib/R JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JAVA_HOME : /etc/alternatives/java_sdk_openjdk X86_64-conda_cos6-linux-gnu-cc -I"/opt/conda/envs/R-3.6-p圓8/lib/R/include" -DNDEBUG -I/etc/alternatives/java_sdk_openjdk/include -I/etc/alternatives/java_sdk_openjdk/include/linux -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /opt/conda/envs/R-3.6-p圓8/include -I/opt/conda/envs/R-3.6-p圓8/include -Wl,-rpath-link,/opt/conda/envs/R-3.6-p圓8/lib -fpic -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /opt/conda/envs/R-3.6-p圓8/include -fdebug-prefix-map=/tmp/build/80754af9/r-base_1589917437985/work=/usr/local/src/conda/r-base-3.6.1 -fdebug-prefix-map=/opt/conda/envs/R-3.6-p圓8=/usr/local/src/conda-prefix -c conftest.c -o conftest.o
R LIBRARY RJAVA ARCHIVE
Java archive tool: /etc/alternatives/java_sdk_openjdk/bin/jarĭetected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linuxĭetected JNI linker flags : -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.8_4.x86_64/jre/lib/amd64/server -ljvm Java headers gen.: /etc/alternatives/java_sdk_openjdk/bin/javah
Java compiler : /etc/alternatives/java_sdk_openjdk/bin/javac
Java home path : /etc/alternatives/java_sdk_openjdk R CMD javareconf Java interpreter : /etc/alternatives/java_sdk_openjdk/jre/bin/java
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